PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001118_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 243aa    MW: 28042.6 Da    PI: 9.0353
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001118_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.34.5e-2249139290
                              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkw 76 
                                       fY +YAke+GF+vrk+ +++s+r+g++t r++vCs eg+r+e++++ ++k r +++ tr++C + +k++  k ++ +
  FANhyb_icon00001118_a.1.g00001.1  49 FYYDYAKEMGFDVRKDDMRTSTRTGRVTIRKWVCSAEGERREKHTDiNNKVRMPKKLTRCHCPCLFKIRYFKkNNSY 125
                                       9*****************************************99997788888****************99889*** PP

                              FAR1  77 evtkleleHnHela 90 
                                        v +++++H+H+l+
  FANhyb_icon00001118_a.1.g00001.1 126 IVVDFRTDHSHDLV 139
                                       ************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1949139IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSNKDASKDE PQHEMSHSNL QNNGIRYDKL SAENLIGVEF VTVEAAETFY YDYAKEMGFD  60
VRKDDMRTST RTGRVTIRKW VCSAEGERRE KHTDINNKVR MPKKLTRCHC PCLFKIRYFK  120
KNNSYIVVDF RTDHSHDLVQ PHESHLLRSH RSVLDSDLAL AKSMRRASIK TCHAYEYMVD  180
VSGGYANVGF TLKDLYNKLD ASQREDMIGG DANATLGYLK GKAVEDKKLF YKYSTDENKR  240
SAN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470762.15e-70PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like, partial
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1594747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-25FAR1-related sequence 5